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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24494242_24500377_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24494242 - 24500377
Intron Length:
6136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTCTCTTCTACT
Flanking Amino Acid:
KMEAYMDRMKVSKAAADLLA
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.2
33.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
75.9
0.58
0.8
70.6
34.8
Minor 5ss
49.1
-0.1
3
73.2
43.7
Minor BPS
59.3
0.37
1.9
80.15
41.9

Associated Gene:

Gene:
GNG4
Ensembl Gene ID:
ENSAPLG00000006331
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006563
24494113 - 24500473
6361