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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24567361_24569861_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24567361 - 24569861
Intron Length:
2501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTGCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GTTTCTTTAATG
Flanking Amino Acid:
KIPVQEEKAIGFNIPSTVDI
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
66.4
0.37
1
62.3
38.7
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
77.9
0.74
1.2
75.88
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006342
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006672
24562681 - 24573223
10543