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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24666692_24670769_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24666692 - 24670769
Intron Length:
4078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTTTATTTTACA
Flanking Amino Acid:
QFAADGQTCVDTDECQQGRC
Intron Amino Acid Position:
847

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
80.1
28.4
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
92.7
0.96
0.7
87.8
29.3
Minor 5ss
39.5
-1.2
2.9
49.4
41.4
Minor BPS
65.1
0.47
1.8
80.31
35

Associated Gene:

Gene:
NID1
Ensembl Gene ID:
ENSAPLG00000007233
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021681
24645632 - 24686800
41169