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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24679647_24680233_R

Intron Information:

Intron Rank:
3
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
24679647 - 24680233
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGCTTT
5'SS Class:
weak_minor
3'SS Sequence:
TTCTCTTTGATAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTCTTTGATA
Flanking Amino Acid:
NDEDSIRNLHKSSNAGKKGV
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
74.2
37
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
77.6
0.62
0.9
76
32.7
Minor 5ss
76.5
0.89
2
81.9
31.2
Minor BPS
74
0.75
1.1
77.56
33.5

Associated Gene:

Gene:
NID1
Ensembl Gene ID:
ENSAPLG00000007233
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007588
24645632 - 24686800
41169
ENSAPLT00000021681
24645632 - 24686800
41169