About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24680464_24681595_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24680464 - 24681595
Intron Length:
1132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTTCCCCACA
Flanking Amino Acid:
PGEDPSLEEKRNTFQAVLAS
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
83.7
27.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
85.9
0.81
0.7
81
24.3
Minor 5ss
32.5
-2
3.5
48.7
47.5
Minor BPS
48.2
-0.1
2.2
71.95
40.1

Associated Gene:

Gene:
NID1
Ensembl Gene ID:
ENSAPLG00000007233
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007588
24645632 - 24686800
41169
ENSAPLT00000021681
24645632 - 24686800
41169