About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24705989_24707505_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
24705989 - 24707505
Intron Length:
1517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TCCTATGCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTCTTTCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
73.5
38.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
71
0.47
0.9
65.5
35.8
Minor 5ss
48.9
-0.1
2.8
68.8
42.1
Minor BPS
73.9
0.83
1.6
91.31
32.6

Associated Gene:

Gene:
GPR137B
Ensembl Gene ID:
ENSAPLG00000008345
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008698
24705904 - 24734455
28552