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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24721944_24725672_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24721944 - 24725672
Intron Length:
3729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
AATTCTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
CTATGTTTAATT
Flanking Amino Acid:
SLANIYLESKGSSVCQVTSI
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.1
30.7
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
79.9
0.67
0.9
70.5
40.2
Minor 5ss
37
-1.5
3.3
49.2
47.3
Minor BPS
62
0.46
1.8
75.99
41.5

Associated Gene:

Gene:
GPR137B
Ensembl Gene ID:
ENSAPLG00000008345
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008698
24705904 - 24734455
28552