About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24725823_24727666_F


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
24725823 - 24727666

Intron Length:
1844

Sequence Information:

Terminal Dinucleotides:
GC-AG

5'SS Sequence:
CAG|GCAAGTATG

5'SS Class:
strong_major

3'SS Sequence:
GAATTTTCAACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTGAAT

U12 Branch Point Sequence:
TTCTCTTTGAAT

Flanking Amino Acid:
DYDWYNVSDQADLKCQLGDA

Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
99.1
1.16
0.7
90.9
28.7

Major BPS
74.6
0.61
1.4
84
34.5

Major PPT
68.1
0.41
1
62.8
42.6

Minor 5ss
29
-2.4
3.8
41.5
45.1

Minor BPS
71
0.74
1.4
83.94
37.1

Associated Gene:

Gene:
GPR137B

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

24705904 - 24734455
28552