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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24730448_24731488_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24730448 - 24731488
Intron Length:
1041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
CAGTCACTAATT
Flanking Amino Acid:
WNIAPQGAQGSFSPDYYDWG
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.2
26.3
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
84.9
0.78
0.9
90.5
22.3
Minor 5ss
38.2
-1.3
3.1
49.9
46.6
Minor BPS
49.2
0.02
2
67.07
43.6

Associated Gene:

Gene:
GPR137B
Ensembl Gene ID:
ENSAPLG00000008345
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008698
24705904 - 24734455
28552