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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24740293_24741441_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24740293 - 24741441
Intron Length:
1149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGCTG
5'SS Class:
major
3'SS Sequence:
TTTTAACTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTTAACT
Flanking Amino Acid:
GDKKGAKSLKEEFRLHFKNI
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
62.8
43.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.8
0.45
1
63.6
42.8
Minor 5ss
28.3
-2.5
3.4
37.6
47.1
Minor BPS
82.1
1.09
1
91
32.8

Associated Gene:

Gene:
ERO1B
Ensembl Gene ID:
ENSAPLG00000008526
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008859
24737882 - 24767513
29632