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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24742821_24743405_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24742821 - 24743405
Intron Length:
585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCCTC
5'SS Class:
major
3'SS Sequence:
TTTTCCTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAG
U12 Branch Point Sequence:
TTTTCCTCAACA
Flanking Amino Acid:
RGESFYTWLEGLCLEKRVFY
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
69
42.1
Major BPS
59.7
0.24
1.5
57.6
41.3
Major PPT
81.8
0.71
0.8
78.1
29.3
Minor 5ss
42.5
-0.8
3.1
59.7
44.9
Minor BPS
83.9
1.06
1.3
92.11
28

Associated Gene:

Gene:
ERO1B
Ensembl Gene ID:
ENSAPLG00000008526
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008859
24737882 - 24767513
29632