About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24743433_24746414_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24743433 - 24746414
Intron Length:
2982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGGGTTTT
5'SS Class:
major
3'SS Sequence:
TATCTGTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
ATACTCTTAATT
Flanking Amino Acid:
RPLNPLAPSRGESFYTWLEG
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
74.8
38.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
82.5
0.73
0.9
76.1
37.6
Minor 5ss
38.9
-1.3
3.3
48.8
47.3
Minor BPS
72.3
0.78
1.1
80.58
34.7

Associated Gene:

Gene:
ERO1B
Ensembl Gene ID:
ENSAPLG00000008526
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008859
24737882 - 24767513
29632