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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24749337_24751176_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24749337 - 24751176
Intron Length:
1840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AAAAGTTTAAAA
Flanking Amino Acid:
NKLGAVNSTLSNQSKEAFID
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
71.4
41.2
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
83
0.74
0.7
81.4
23.7
Minor 5ss
55.9
0.2
2.5
73.6
43
Minor BPS
47
-0.2
1.8
54.09
37.7

Associated Gene:

Gene:
ERO1B
Ensembl Gene ID:
ENSAPLG00000008526
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008859
24737882 - 24767513
29632