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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24758499_24759781_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24758499 - 24759781
Intron Length:
1283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
AAAAACTGAATT
Flanking Amino Acid:
KDCHVEPCPESKIPVGIKAG
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
78.6
35.4
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
85.7
0.8
0.7
84.6
30.3
Minor 5ss
42.9
-0.8
3.1
59.7
45.1
Minor BPS
49.2
0.02
1.6
64.03
39.4

Associated Gene:

Gene:
ERO1B
Ensembl Gene ID:
ENSAPLG00000008526
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008859
24737882 - 24767513
29632