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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24759866_24763063_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24759866 - 24763063
Intron Length:
3198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAATTA
5'SS Class:
major
3'SS Sequence:
TTTGTGTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTGATTGTAACC
Flanking Amino Acid:
QERDYFRYYKVNLKRPCPFW
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
71.3
35.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
74.8
0.56
1
73.5
41.9
Minor 5ss
39.8
-1.1
3.4
56.1
48.1
Minor BPS
50.5
-0
2
65.92
40.3

Associated Gene:

Gene:
ERO1B
Ensembl Gene ID:
ENSAPLG00000008526
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008859
24737882 - 24767513
29632