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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24763184_24767501_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
24763184 - 24767501
Intron Length:
4318

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TTG|GCGGTGCTG
5'SS Class:
weak_major
3'SS Sequence:
GTTTTTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TCTTGATTAAAA
Flanking Amino Acid:
MVSLLTGVLDDCLC
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.6
0.09
1.2
48
40.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
88.2
0.86
0.7
84.2
30.9
Minor 5ss
17.4
-3.8
4
25.4
39.5
Minor BPS
52.6
0.08
2.1
69.75
42.3

Associated Gene:

Gene:
ERO1B
Ensembl Gene ID:
ENSAPLG00000008526
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008859
24737882 - 24767513
29632