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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24770192_24776753_R

Intron Information:

Intron Rank:
153111
Intron Class:
major
Intron Phase:
Intron Coordinates:
24770192 - 24776753
Intron Length:
6562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTTAGTATG
5'SS Class:
major
3'SS Sequence:
TATACAATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATACAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
73.9
42.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.5
0.48
1
63.1
41.7
Minor 5ss
35.3
-1.7
2.6
36.2
40.2
Minor BPS
50.5
0.09
1.9
78.26
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029931
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030466
24770070 - 24777710
7641