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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24775482_24776309_F

Intron Information:

Intron Rank:
148697
Intron Class:
major
Intron Phase:
Intron Coordinates:
24775482 - 24776309
Intron Length:
828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TATTTATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
74.9
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.2
0.81
0.8
78
40.1
Minor 5ss
30
-2.3
2.7
36.3
40.6
Minor BPS
71.8
0.76
1.5
85.98
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030043
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020944
24770070 - 24777710
7641