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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24812615_24817484_R

Intron Information:

Intron Rank:
138450
Intron Class:
major
Intron Phase:
Intron Coordinates:
24812615 - 24817484
Intron Length:
4870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TTGTGCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
78.7
0.65
0.9
78.2
34.8
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
58.9
0.36
2
79.35
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022010
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033925
24812124 - 24817673
5550