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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24817675_24819121_R

Intron Information:

Intron Rank:
138449
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
24817675 - 24819121
Intron Length:
1447

Sequence Information:

Terminal Dinucleotides:
GT-AA
5'SS Sequence:
AAG|GTGGTAGCT
5'SS Class:
major
3'SS Sequence:
TTTATTTTTTAAA|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.1
61.4
37.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
44.8
-0.3
3.3
79.3
38.2
Minor 5ss
26.3
-2.7
3.5
39.2
46.1
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022010
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025850
24816393 - 24819156
2764