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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24928229_24928881_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
24928229 - 24928881
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
ATTAATACCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTAATA
Flanking Amino Acid:
SLSTAAECVKVAKEHCKQLS
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
100
1.24
0.5
100
0
Major PPT
54.8
0.11
1.1
50.8
42.1
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
80
0.94
1.4
88.77
27.5

Associated Gene:

Gene:
EXOC8
Ensembl Gene ID:
ENSAPLG00000030708
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034668
24927620 - 24930400
2781