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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24930151_24931590_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24930151 - 24931590
Intron Length:
1440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTGAT
5'SS Class:
major
3'SS Sequence:
GTGTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
CTTTCAATATCT
Flanking Amino Acid:
MWLSWYISLSRCAGVCRYEG
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.2
72.3
39.5
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
83.3
0.75
0.9
80.8
36.8
Minor 5ss
38.5
-1.3
3.5
57.3
47.4
Minor BPS
50.6
0.1
2.2
78.25
43.6

Associated Gene:

Gene:
SPRTN
Ensembl Gene ID:
ENSAPLG00000013330
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013877
24929855 - 24934929
5075