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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_24951478_24952979_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24951478 - 24952979
Intron Length:
1502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACTC
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTTTTTCATC
Flanking Amino Acid:
PHEVQPAFATRYAITVWYFD
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
69.9
41.1
Major BPS
100
1.24
0.5
100
0
Major PPT
71.9
0.49
0.7
64.9
30.7
Minor 5ss
35.1
-1.7
3.5
50.3
46.3
Minor BPS
58.2
0.24
1.7
68.66
38.1

Associated Gene:

Gene:
EGLN1
Ensembl Gene ID:
ENSAPLG00000013374
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013931
24949318 - 24954961
5644