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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25008763_25011353_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25008763 - 25011353
Intron Length:
2591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
ATTGACTCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
GTTTCTGTAATC
Flanking Amino Acid:
PSSPLMTSFKSFQLELDTRH
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
80
34.8
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
70
0.45
0.9
62.8
38.7
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
61.8
0.35
2
74.58
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013433
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014002
25005552 - 25027400
21849