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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25011469_25013060_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25011469 - 25013060
Intron Length:
1592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTATGATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TGCTTTATGATT
Flanking Amino Acid:
RTIFLLHRFTSAPNGEEILN
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
77.5
32.9
Major BPS
84.6
0.86
1
74
41.2
Major PPT
80.5
0.69
0.9
74.2
40.1
Minor 5ss
29.1
-2.4
2.8
34.7
41.7
Minor BPS
49.7
0.06
1.5
67.47
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013433
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014002
25005552 - 25027400
21849