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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25013192_25025727_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25013192 - 25025727
Intron Length:
12536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTAT
5'SS Class:
strong_major
3'SS Sequence:
GCTGTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTAGCTTATTT
Flanking Amino Acid:
MYQFHRAISPGLQEYVEAAS
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.4
23.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.2
0.72
0.9
76.3
37.7
Minor 5ss
41.2
-1
3
57.8
46.8
Minor BPS
52.5
0.16
2
74.97
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013433
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014002
25005552 - 25027400
21849