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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25025856_25027025_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25025856 - 25027025
Intron Length:
1170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAAAGTT
5'SS Class:
major
3'SS Sequence:
GATCTGTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTGTCTTTACTG
Flanking Amino Acid:
AEDREETTNTTSSSQDKQPN
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
72.6
36.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
69.8
0.44
0.9
65.7
40.6
Minor 5ss
36.2
-1.6
3.7
56.5
47.7
Minor BPS
62.2
0.24
1.7
66.43
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013433
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014002
25005552 - 25027400
21849