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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25050442_25066280_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25050442 - 25066280
Intron Length:
15839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAGA
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCACCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
AATGCCTTAATT
Flanking Amino Acid:
SHHLWSIGLKDGSEHSMPSG
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71.3
40.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
67.1
0.38
0.8
57.8
31.7
Minor 5ss
38.1
-1.3
3
49.1
46.7
Minor BPS
75.8
0.89
1.3
83.61
37.4

Associated Gene:

Gene:
DISC1
Ensembl Gene ID:
ENSAPLG00000024768
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038200
25050302 - 25247638
197337
ENSAPLT00000022401
25048443 - 25245402
196960
ENSAPLT00000021235
25048443 - 25227136
178694
ENSAPLT00000045843
25048443 - 25245402
196960