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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25067270_25070628_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25067270 - 25070628
Intron Length:
3359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTAAT
5'SS Class:
major
3'SS Sequence:
TTTCTGTATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTTATAAGT
Flanking Amino Acid:
CQLGNRSTLKIKSLILRLQR
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
80.8
32.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.7
0.62
0.9
73.9
35.8
Minor 5ss
39.8
-1.1
2.5
51.4
45.2
Minor BPS
54
0.2
1.9
75.66
41.6

Associated Gene:

Gene:
DISC1
Ensembl Gene ID:
ENSAPLG00000024768
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021235
25048443 - 25227136
178694
ENSAPLT00000045843
25048443 - 25245402
196960
ENSAPLT00000014027
25048061 - 25147032
98972
ENSAPLT00000038200
25050302 - 25247638
197337
ENSAPLT00000037384
25048061 - 25247638
199578
ENSAPLT00000022401
25048443 - 25245402
196960
ENSAPLT00000048388
25048061 - 25245418
197358