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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25129039_25133533_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25129039 - 25133533
Intron Length:
4495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCAATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TCTTCCTCAATC
Flanking Amino Acid:
STSIKETTAKVCTSQKLCST
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
79.4
0.73
1
80.1
32
Major PPT
70.7
0.47
0.9
63.5
37.2
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
73.1
0.7
1.5
78.52
37.5

Associated Gene:

Gene:
DISC1
Ensembl Gene ID:
ENSAPLG00000024768
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022401
25048443 - 25245402
196960
ENSAPLT00000048388
25048061 - 25245418
197358
ENSAPLT00000021235
25048443 - 25227136
178694
ENSAPLT00000045843
25048443 - 25245402
196960
ENSAPLT00000014027
25048061 - 25147032
98972
ENSAPLT00000038200
25050302 - 25247638
197337
ENSAPLT00000037384
25048061 - 25247638
199578