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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25133637_25145979_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
25133637 - 25145979
Intron Length:
12343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
ACAAAACATGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
GCCCCCACAAAA
Flanking Amino Acid:
LLEAKMLAVSGSNFGTAKDL
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
54.2
0.1
1.1
44.9
40.6
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
43
-0.5
1.8
48.51
41.1

Associated Gene:

Gene:
DISC1
Ensembl Gene ID:
ENSAPLG00000024768
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014027
25048061 - 25147032
98972
ENSAPLT00000038200
25050302 - 25247638
197337
ENSAPLT00000037384
25048061 - 25247638
199578
ENSAPLT00000022401
25048443 - 25245402
196960
ENSAPLT00000048388
25048061 - 25245418
197358
ENSAPLT00000021235
25048443 - 25227136
178694
ENSAPLT00000045843
25048443 - 25245402
196960