About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25146169_25201228_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25146169 - 25201228
Intron Length:
55060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
CATTACCTAATT
Flanking Amino Acid:
QELEQGETAFVTSVKENAEK
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
37.6
-1.4
2.8
48.3
42.5
Minor BPS
56.4
0.28
1.9
75.06
41.5

Associated Gene:

Gene:
DISC1
Ensembl Gene ID:
ENSAPLG00000024768
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038200
25050302 - 25247638
197337
ENSAPLT00000037384
25048061 - 25247638
199578
ENSAPLT00000022401
25048443 - 25245402
196960
ENSAPLT00000048388
25048061 - 25245418
197358
ENSAPLT00000021235
25048443 - 25227136
178694
ENSAPLT00000045843
25048443 - 25245402
196960