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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25201290_25221877_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25201290 - 25221877
Intron Length:
20588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTGGCTTTTATT
Flanking Amino Acid:
YMEMLEDKLHSCGSQLLQRV
Intron Amino Acid Position:
680

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
84
0.76
0.8
81.4
34.9
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
57.8
0.33
1.7
74.98
42.6

Associated Gene:

Gene:
DISC1
Ensembl Gene ID:
ENSAPLG00000024768
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038200
25050302 - 25247638
197337
ENSAPLT00000037384
25048061 - 25247638
199578
ENSAPLT00000022401
25048443 - 25245402
196960
ENSAPLT00000048388
25048061 - 25245418
197358
ENSAPLT00000021235
25048443 - 25227136
178694
ENSAPLT00000045843
25048443 - 25245402
196960