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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2540565_2540751_F

Intron Information:

Intron Rank:
126434
Intron Class:
major
Intron Phase:
Intron Coordinates:
2540565 - 2540751
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTAAA
5'SS Class:
major
3'SS Sequence:
TTTTATATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTCTTTTATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
76.2
34.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.7
0.62
0.8
70.9
39.4
Minor 5ss
34
-1.8
2.9
42.5
44.3
Minor BPS
66.7
0.52
1.6
74.49
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018152
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042759
2540477 - 2572692
32216