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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25406408_25417754_R

Intron Information:

Intron Rank:
140289
Intron Class:
major
Intron Phase:
Intron Coordinates:
25406408 - 25417754
Intron Length:
11347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGCAG
5'SS Class:
major
3'SS Sequence:
GCTTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GCTTCTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
58.9
41.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.4
0.8
0.8
79.4
32.6
Minor 5ss
24
-3
3.1
28.6
43.8
Minor BPS
65.7
0.49
1.6
71.79
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022846
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021425
25405980 - 25417926
11947