About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2540971_2568159_F

Intron Information:

Intron Rank:
126435
Intron Class:
major
Intron Phase:
Intron Coordinates:
2540971 - 2568159
Intron Length:
27189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAGTG
5'SS Class:
major
3'SS Sequence:
TTTTCCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTCCTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
64.4
39.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
85.4
0.8
0.7
80.5
24.8
Minor 5ss
40.2
-1.1
3.4
55.8
48.4
Minor BPS
67.6
0.55
2
83.78
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018152
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042759
2540477 - 2572692
32216