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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25417901_25422782_R

Intron Information:

Intron Rank:
140288
Intron Class:
major
Intron Phase:
Intron Coordinates:
25417901 - 25422782
Intron Length:
4882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCTTC
5'SS Class:
major
3'SS Sequence:
TTGTGATTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTACAATGAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
0.9
71
35.7
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
79.9
0.67
0.9
73
41.3
Minor 5ss
49.1
-0.1
2.7
66.9
44.7
Minor BPS
47
-0.3
1.9
57.84
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022846
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020147
25415395 - 25423691
8297
ENSAPLT00000025840
25412613 - 25423691
11079