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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25433894_25436575_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25433894 - 25436575
Intron Length:
2682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTCAA
5'SS Class:
major
3'SS Sequence:
GTTTACTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTACTTTATAG
Flanking Amino Acid:
TDGKDFLEATGEHAPTTLTG
Intron Amino Acid Position:
1641

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
66.8
40.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.3
0.66
0.8
73.2
37
Minor 5ss
39.2
-1.2
2.8
40.9
45.4
Minor BPS
55.3
0.03
1.8
65.35
42.4

Associated Gene:

Gene:
SIPA1L2
Ensembl Gene ID:
ENSAPLG00000013477
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040453
25432790 - 25570377
137588
ENSAPLT00000031611
25432790 - 25570377
137588
ENSAPLT00000014091
25432790 - 25570377
137588