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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25436700_25437642_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25436700 - 25437642
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGATGATC
5'SS Class:
major
3'SS Sequence:
TATTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTTACA
Flanking Amino Acid:
GPFCHHTPFLDQRVASFCTL
Intron Amino Acid Position:
1600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.9
34.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.5
0.96
0.7
87.8
29.2
Minor 5ss
31.4
-2.1
3.2
42.6
44.5
Minor BPS
65.9
0.49
1.6
75.62
35.9

Associated Gene:

Gene:
SIPA1L2
Ensembl Gene ID:
ENSAPLG00000013477
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014091
25432790 - 25570377
137588