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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25455207_25457818_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25455207 - 25457818
Intron Length:
2612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGAATT
5'SS Class:
major
3'SS Sequence:
ATTGTTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTTTGCTAAAAA
Flanking Amino Acid:
PEESEIAECHEVYDDIDAVS
Intron Amino Acid Position:
1413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
78.3
36.2
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
75.1
0.57
1
70.5
39.5
Minor 5ss
40.7
-1
3.1
55.2
42.8
Minor BPS
56.8
0.21
2.2
76.43
40.8

Associated Gene:

Gene:
SIPA1L2
Ensembl Gene ID:
ENSAPLG00000013477
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040453
25432790 - 25570377
137588
ENSAPLT00000031611
25432790 - 25570377
137588
ENSAPLT00000014091
25432790 - 25570377
137588