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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25458044_25461949_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25458044 - 25461949
Intron Length:
3906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTCTTTCTTT
Flanking Amino Acid:
GDLSEISSHSSGSHHSGSPS
Intron Amino Acid Position:
1338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
96.4
1.04
0.5
95.9
14.1
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
46.2
-0.2
3.6
83.14
39

Associated Gene:

Gene:
SIPA1L2
Ensembl Gene ID:
ENSAPLG00000013477
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040453
25432790 - 25570377
137588
ENSAPLT00000031611
25432790 - 25570377
137588
ENSAPLT00000014091
25432790 - 25570377
137588