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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25465188_25465567_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25465188 - 25465567
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATAATA
5'SS Class:
major
3'SS Sequence:
TTATTTATGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CATTCAGAAATT
Flanking Amino Acid:
EETLDGTRHSETKWHAPSTK
Intron Amino Acid Position:
1174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
75.4
33.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.6
0.6
1
74.2
40
Minor 5ss
37.3
-1.4
3
46.5
42.9
Minor BPS
44
-0.3
2.4
65.77
45.1

Associated Gene:

Gene:
SIPA1L2
Ensembl Gene ID:
ENSAPLG00000013477
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031611
25432790 - 25570377
137588
ENSAPLT00000014091
25432790 - 25570377
137588
ENSAPLT00000040453
25432790 - 25570377
137588