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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25484436_25487219_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25484436 - 25487219
Intron Length:
2784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TACTTCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TACTTCTTTATA
Flanking Amino Acid:
DIREIVQRLEIVTRGCETTE
Intron Amino Acid Position:
935

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
72
0.55
1
71.8
31.4
Major PPT
81.5
0.71
0.8
76.5
31.8
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
60.1
0.31
1.6
67.46
39.7

Associated Gene:

Gene:
SIPA1L2
Ensembl Gene ID:
ENSAPLG00000013477
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031611
25432790 - 25570377
137588
ENSAPLT00000014091
25432790 - 25570377
137588
ENSAPLT00000040453
25432790 - 25570377
137588