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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25487797_25489317_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25487797 - 25489317
Intron Length:
1521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCATCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTCTTCATCT
Flanking Amino Acid:
HNPCTENVCYSVGVSRSKDV
Intron Amino Acid Position:
742

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
80.7
0.69
0.8
73.4
37
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
66.8
0.61
1.8
88.14
37.2

Associated Gene:

Gene:
SIPA1L2
Ensembl Gene ID:
ENSAPLG00000013477
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040453
25432790 - 25570377
137588
ENSAPLT00000031611
25432790 - 25570377
137588
ENSAPLT00000014091
25432790 - 25570377
137588