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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25489476_25496173_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25489476 - 25496173
Intron Length:
6698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCATCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATAACT
Flanking Amino Acid:
LPYMPSNRQQLLRKRHIGND
Intron Amino Acid Position:
690

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
85.7
25.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.5
0.55
0.9
67.1
39.5
Minor 5ss
48
-0.2
2.5
66.4
45.1
Minor BPS
74.1
0.84
1.5
92.32
29.7

Associated Gene:

Gene:
SIPA1L2
Ensembl Gene ID:
ENSAPLG00000013477
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040453
25432790 - 25570377
137588
ENSAPLT00000031611
25432790 - 25570377
137588
ENSAPLT00000014091
25432790 - 25570377
137588