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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2558227_2570226_R

Intron Information:

Intron Rank:
151256
Intron Class:
major
Intron Phase:
Intron Coordinates:
2558227 - 2570226
Intron Length:
12000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
76.5
39.2
Major BPS
100
1.24
0.5
100
0
Major PPT
75
0.56
0.8
68.5
31.9
Minor 5ss
34.9
-1.7
3.3
50
46.3
Minor BPS
76.8
0.84
1.5
88.12
28.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028903
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044665
2557813 - 2570325
12513