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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25592428_25593094_R

Intron Information:

Intron Rank:
149722
Intron Class:
major
Intron Phase:
Intron Coordinates:
25592428 - 25593094
Intron Length:
667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGCTATA
5'SS Class:
major
3'SS Sequence:
TTTATTTTGTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ACTATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.37
1.3
68.9
43.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.5
0.66
0.9
81.3
36.3
Minor 5ss
43
-0.8
3
50.5
46.1
Minor BPS
51
0.11
1.6
65.86
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028092
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043024
25591639 - 25593205
1567
ENSAPLT00000024506
25589410 - 25593205
3796