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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2570001_2572161_F

Intron Information:

Intron Rank:
126433
Intron Class:
major
Intron Phase:
Intron Coordinates:
2570001 - 2572161
Intron Length:
2161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
75
35.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
93.2
0.97
0.6
89.1
19.8
Minor 5ss
32.6
-2
3.3
40.4
40
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018152
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026653
2569244 - 2572522
3279