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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25720067_25723623_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25720067 - 25723623
Intron Length:
3557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TGGCAATTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGCAA
U12 Branch Point Sequence:
TCTTTGGCAATT
Flanking Amino Acid:
RSRKDVKVFNWLQVLRHWWT
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
79.5
28.3
Major BPS
50.7
0.02
1.5
63.4
44.3
Major PPT
65.5
0.35
1
57.4
42.1
Minor 5ss
33
-1.9
2.8
41.3
38.3
Minor BPS
42.3
-0.5
2.6
66.82
44.9

Associated Gene:

Gene:
NTPCR
Ensembl Gene ID:
ENSAPLG00000008470
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008808
25713424 - 25723772
10349