Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_25751576_25755690_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25751576 - 25755690

Intron Length:

4115

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAACTCT

5'SS Class:

strong_major

3'SS Sequence:

ATTTTGTCAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTGAT

U12 Branch Point Sequence:

ATTTTGTCAACA

Flanking Amino Acid:

RRILIRYYIKSIIYFTASSP

Intron Amino Acid Position:

1429

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

74.7

36.3

Major BPS

74.7

0.61

0.9

63.4

35.6

Major PPT

75.3

0.57

70.5

39.5

Minor 5ss

45.8

-0.4

65.7

45.4

Minor BPS

54.5

0.14

2.2

73.6

38.2

Associated Gene:

Gene:

PCNX2

Ensembl Gene ID:

ENSAPLG00000008853

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029317

25732812 - 25882516

149705

ENSAPLT00000009303

25732812 - 25882516

149705